Here is a list of all class members with links to the classes they belong to:
- c -
- CachedMolHolder()
: RDKit::CachedMolHolder
- CachedSmilesMolHolder()
: RDKit::CachedSmilesMolHolder
- CachedTrustedSmilesMolHolder()
: RDKit::CachedTrustedSmilesMolHolder
- calcAnnotationPosition()
: RDKit::MolDraw2D_detail::DrawMol
- calcCentre()
: RDKit::MolDraw2D_detail::StringRect
- calcChiralVolume()
: DistGeom::ChiralViolationContrib
- calcCorners()
: RDKit::MolDraw2D_detail::StringRect
- calcDoubleBondLines()
: RDKit::MolDraw2D_detail::DrawMol
- calcEnergy()
: ForceFields::ForceField
- calcExplicitValence()
: RDKit::Atom
- calcGlyphBBox()
: RDKit::MolDraw2D_detail::DrawTextFT
- calcGrad()
: ForceFields::ForceField
- calcImplicitValence()
: RDKit::Atom
- calcMeanBondLength()
: RDKit::MolDraw2D_detail::DrawMol
- calcMetricMatrix()
: RDDataManip::MetricMatrixCalc< vectType, entryType >
- calcRadicalRect()
: RDKit::MolDraw2D_detail::DrawMol
- calcSymbolEllipse()
: RDKit::MolDraw2D_detail::DrawMolMCH
- calcTripleBondLines()
: RDKit::MolDraw2D_detail::DrawMol
- calculateScale()
: RDKit::MolDraw2D_detail::DrawMol
- callback
: RDKit::DGeomHelpers::EmbedParameters
- Canceled
: RDKit::MCSResult
- canGrowBiggerThan()
: RDKit::FMCS::Seed
- canon_atom()
: RDKit::Canon::canon_atom
- canonical
: RDKit::SmilesWriteParams
- canonicalize()
: RDKit::MolStandardize::TautomerEnumerator
- canonicalizeOrientation()
: RDDepict::EmbeddedFrag
- canonOrient
: RDDepict::Compute2DCoordParameters
- canSerialize()
: RDKit::CustomPropHandler
, RDKit::DataStructsExplicitBitVecPropHandler
- CartesianProduct()
: RDKit::CartesianProduct
- CartesianProductStrategy()
: RDKit::CartesianProductStrategy
- CAT_GRAPH_TRAITS
: RDCatalog::HierarchCatalog< entryType, paramType, orderType >
- Catalog()
: RDCatalog::Catalog< entryType, paramType >
- CatalogGraph
: RDCatalog::HierarchCatalog< entryType, paramType, orderType >
- ccw
: RDDepict::EmbeddedAtom
- cds_
: RDKit::MolDraw2D_detail::AtomSymbol
- centeredOn
: RDKit::Chirality::StereoInfo
- centreMoleculesBeforeDrawing
: RDKit::MolDrawOptions
- CENTROID
: RDPickers::HierarchicalClusterPicker
- changeRoot()
: RDKit::CIPLabeler::Digraph
- changeToDrawCoords()
: RDKit::MolDraw2D_detail::DrawMol
- char_type
: boost_adaptbx::python::streambuf
- Charge
: RDKit::MolStandardize::ChargeCorrection
, RDKit::StructureCheck::AugmentedAtom
, RDKit::StructureCheck::Ligand
- ChargeCorrection()
: RDKit::MolStandardize::ChargeCorrection
- ChargeFix()
: RDKit::StructureCheck::ChargeFix
- ChargeIncTable
: RDKit::StructureCheck::StructCheckerOptions
- Charges
: RDKit::MolStandardize::TautomerTransform
- checkAllBondsToAttachmentPointPresent()
: RDKit::RCore
- CheckCollisions
: RDKit::StructureCheck::StructCheckerOptions
- checkForEnd()
: RDKit::ForwardSDMolSupplier
- checkIfMatchAndAppend()
: RDKit::FMCS::MaximumCommonSubgraph
- checkMolStructure()
: RDKit::StructureCheck::StructChecker
- CheckStereo
: RDKit::StructureCheck::StructCheckerOptions
- checkValid()
: DistGeom::BoundsMatrix
- CHEMBL
: RDKit::FilterCatalogParams
- CHEMBL_BMS
: RDKit::FilterCatalogParams
- CHEMBL_Dundee
: RDKit::FilterCatalogParams
- CHEMBL_Glaxo
: RDKit::FilterCatalogParams
- CHEMBL_Inpharmatica
: RDKit::FilterCatalogParams
- CHEMBL_LINT
: RDKit::FilterCatalogParams
- CHEMBL_MLSMR
: RDKit::FilterCatalogParams
- CHEMBL_SureChEMBL
: RDKit::FilterCatalogParams
- ChemicalFeature()
: ChemicalFeatures::ChemicalFeature
- ChemicalReaction()
: RDKit::ChemicalReaction
- ChemicalReactionException()
: RDKit::ChemicalReactionException
- ChemicalReactionParserException()
: RDKit::ChemicalReactionParserException
- chi
: ForceFields::MMFF::MMFFCovRadPauEle
- CHI_ALLENE
: RDKit::Atom
- CHI_OCTAHEDRAL
: RDKit::Atom
- CHI_OTHER
: RDKit::Atom
- CHI_SQUAREPLANAR
: RDKit::Atom
- CHI_TETRAHEDRAL
: RDKit::Atom
- CHI_TETRAHEDRAL_CCW
: RDKit::Atom
- CHI_TETRAHEDRAL_CW
: RDKit::Atom
- CHI_TRIGONALBIPYRAMIDAL
: RDKit::Atom
- CHI_UNSPECIFIED
: RDKit::Atom
- CHILD_TYPE
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
- CHILD_VECT
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
- CHILD_VECT_CI
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
- CHILD_VECT_I
: Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
- CHIRAL_ATOM
: RDKit::StereoBondThresholds
- ChiralAtomCompareFunctor()
: RDKit::Canon::ChiralAtomCompareFunctor
- ChiralSet()
: DistGeom::ChiralSet
- ChiralType
: RDKit::Atom
- ChiralViolationContrib()
: DistGeom::ChiralViolationContrib
- CHISQUARE
: RDInfoTheory::InfoBitRanker
- choose()
: RDKit::MolStandardize::LargestFragmentChooser
- chromosomeLength()
: RDKit::RGroupGa
- chunkSize
: RDKit::RGroupDecompositionParameters
- CIPMol()
: RDKit::CIPLabeler::CIPMol
- CIPMolIter()
: RDKit::CIPLabeler::CIPMolSpan< T, U >::CIPMolIter
- CIPMolSpan()
: RDKit::CIPLabeler::CIPMolSpan< T, U >
- circleAtoms
: RDKit::MolDrawOptions
- CISTRANS
: RDDepict::EmbeddedAtom
- CisTransNbr
: RDDepict::EmbeddedAtom
- clash_score_
: RDKit::MolDraw2D_detail::StringRect
- class_
: RDKit::MolDraw2D_detail::DrawAnnotation
- cleanup()
: RDKit::FPBReader
- cleanup_rdvalue()
: RDKit::RDValue
- CleanupParameters()
: RDKit::MolStandardize::CleanupParameters
- clear()
: Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, RDKit::FingerprintVarianceScoreData
, RDKit::FMCS::DuplicatedSeedCache
, RDKit::FMCS::RingMatchTableSet
, RDKit::FMCS::SeedSet
, RDKit::FMCS::TargetMatch
, RDKit::FMCS::TArray2D< T >
, RDKit::RDProps
, RDKit::RWMol
, RDKit::StructureCheck::StructCheckerOptions
, RDKit::Trajectory
- clearAllAtomBookmarks()
: RDKit::ROMol
- clearAllBondBookmarks()
: RDKit::ROMol
- clearAtomBookmark()
: RDKit::ROMol
- clearAttachPoints()
: RDKit::SubstanceGroup
- clearBackground
: RDKit::MolDrawOptions
- clearBits()
: BitVect
, ExplicitBitVect
, SparseBitVect
- clearBondBookmark()
: RDKit::ROMol
- clearBrackets()
: RDKit::SubstanceGroup
- clearCache()
: RDKit::MolChemicalFeature
- clearComputedProps()
: RDKit::RDProps
, RDKit::ROMol
- clearConformers()
: RDKit::ROMol
- clearConfs
: RDDepict::Compute2DCoordParameters
, RDKit::DGeomHelpers::EmbedParameters
- clearCStates()
: RDKit::SubstanceGroup
- clearDrawing()
: RDKit::MolDraw2D
, RDKit::MolDraw2DCairo
, RDKit::MolDraw2DJS
, RDKit::MolDraw2DQt
, RDKit::MolDraw2DSVG
, RDKit::MolDraw2Dwx
- clearProp()
: RDKit::FilterCatalogEntry
, RDKit::FragCatalogEntry
, RDKit::MolCatalogEntry
, RDKit::RDProps
- ClearTee()
: boost::logging::rdLogger
- clearTieStore()
: RDKit::RGroupScorer
- clearVal()
: RDKit::Dict
- CLINK
: RDPickers::HierarchicalClusterPicker
- clone()
: RDKit::AtomInvariantsGenerator
, RDKit::AtomPair::AtomPairAtomInvGenerator
, RDKit::BondInvariantsGenerator
, RDKit::CustomPropHandler
, RDKit::DataStructsExplicitBitVecPropHandler
- Clone()
: RDKit::FilterMatcherBase
- clone()
: RDKit::MorganFingerprint::MorganAtomInvGenerator
, RDKit::MorganFingerprint::MorganBondInvGenerator
, RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator
, RDKit::RDKitFP::RDKitFPAtomInvGenerator
- close()
: RDKit::MolSupplier
, RDKit::MolWriter
, RDKit::PDBWriter
, RDKit::SDWriter
, RDKit::SmilesWriter
, RDKit::TDTWriter
- cluster()
: RDPickers::HierarchicalClusterPicker
- ClusterMethod
: RDPickers::HierarchicalClusterPicker
- coeff
: RDKit::MolAlign::O3AFuncData
- col2_
: RDKit::MolDraw2D_detail::DrawShapeDashedWedge
, RDKit::MolDraw2D_detail::DrawShapeSolidWedge
, RDKit::MolDraw2D_detail::DrawShapeWavyLine
- CollectionType
: RDKit::MolChemicalFeatureDef
- collectMolCounts
: RDKit::ScaffoldNetwork::ScaffoldNetworkParams
- collectVotes()
: RDInfoTheory::BitCorrMatGenerator
- CollisionLimitPercent
: RDKit::StructureCheck::StructCheckerOptions
- colour()
: RDKit::MolDraw2D
, RDKit::MolDraw2D_detail::DrawText
- colour_
: RDKit::MolDraw2D_detail::AtomSymbol
, RDKit::MolDraw2D_detail::DrawAnnotation
, RDKit::MolDraw2D_detail::DrawText
- colourMap
: RDKit::MolDraw2DUtils::ContourParams
- combinedMol
: RDKit::RGroupData
- comicMode
: RDKit::MolDrawOptions
- comment
: RDKit::FilterData_t
- commitBatchEdit()
: RDKit::RWMol
- commonArgumentsString()
: RDKit::FingerprintArguments
- compact()
: RDPickers::LeaderPickerState< T >
- compact_next()
: RDPickers::LeaderPickerState< T >
- compare()
: RDKit::Canon::bondholder
, RDKit::CIPLabeler::Rule1a
, RDKit::CIPLabeler::Rule1b
, RDKit::CIPLabeler::Rule2
, RDKit::CIPLabeler::Rule3
, RDKit::CIPLabeler::Rule4a
, RDKit::CIPLabeler::Rule4b
, RDKit::CIPLabeler::Rule4c
, RDKit::CIPLabeler::Rule5
, RDKit::CIPLabeler::Rule5New
, RDKit::CIPLabeler::Rule6
, RDKit::CIPLabeler::Rules
, RDKit::CIPLabeler::SequenceRule
- CompareFunctionsUserData
: RDKit::MCSParameters
- compareParams()
: RDGeom::UniformGrid3D
- compareStereo()
: RDKit::Canon::bondholder
- compareTo()
: RDKit::CIPLabeler::PairList
- CompleteRingsOnly
: RDKit::MCSAtomCompareParameters
, RDKit::MCSBondCompareParameters
- Composition2N()
: RDKit::FMCS::Composition2N
- Compute2DCoordParameters()
: RDDepict::Compute2DCoordParameters
- compute2N()
: RDKit::FMCS::Composition2N
- computeBox()
: RDDepict::EmbeddedFrag
- computeCostMatrix()
: RDKit::MolAlign::LAP
- computeDistMat()
: RDDepict::EmbeddedFrag
- computeKey()
: RDKit::FMCS::SubstructureCache::HashKey
- computeMinCostPath()
: RDKit::MolAlign::LAP
- computeMMFFCharges()
: RDKit::MMFF::MMFFMolProperties
- computeProperties()
: RDKit::Descriptors::Properties
- computeRemainingSize()
: RDKit::FMCS::Seed
- computeRingMatchTable()
: RDKit::FMCS::RingMatchTableSet
- Cond
: RDKit::StructureCheck::PathEntry
- cond_used
: RDKit::StructureCheck::PathEntry
- confId
: RDKit::FingerprintFuncArguments
- confId2D
: RDKit::GeneralMolSupplier::SupplierOptions
- confId3D
: RDKit::GeneralMolSupplier::SupplierOptions
- confId_
: RDKit::MolDraw2D_detail::DrawMol
- Configuration()
: RDKit::CIPLabeler::Configuration
- Conformer()
: RDKit::Conformer
- ConformerException()
: RDKit::ConformerException
- ConicToFunctionImpl()
: RDKit::MolDraw2D_detail::DrawTextFT
, RDKit::MolDraw2D_detail::DrawTextFTCairo
, RDKit::MolDraw2D_detail::DrawTextFTJS
, RDKit::MolDraw2D_detail::DrawTextFTQt
, RDKit::MolDraw2D_detail::DrawTextFTSVG
- ConrecSegment()
: conrec::ConrecSegment
- const_iterator
: RDKit::FMCS::SeedSet
, RDKit::MolStandardize::TautomerEnumeratorResult::const_iterator
- CONST_SENTRY
: RDKit::FilterCatalog
- ConstBondIterator_()
: RDKit::ConstBondIterator_
- CONTAINER_TYPE
: Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
- context_
: RDKit::MolDraw2D_detail::DrawTextFTJS
, RDKit::MolDraw2D_detail::DrawTextJS
- continuousHighlight
: RDKit::MolDrawOptions
- contourColour
: RDKit::MolDraw2DUtils::ContourParams
- contourWidth
: RDKit::MolDraw2DUtils::ContourParams
- contribs()
: ForceFields::ForceField
- controllingAtoms
: RDKit::Canon::bondholder
, RDKit::Chirality::StereoInfo
- ConvertAtomTexts
: RDKit::StructureCheck::StructCheckerOptions
- ConvertSText
: RDKit::StructureCheck::StructCheckerOptions
- coordMap
: RDDepict::Compute2DCoordParameters
, RDKit::DGeomHelpers::EmbedParameters
- copy()
: DistGeom::ChiralViolationContrib
, DistGeom::DistViolationContrib
, DistGeom::FourthDimContrib
, ForceFields::CrystalFF::TorsionAngleContribM6
, ForceFields::ForceFieldContrib
, ForceFields::MMFF::AngleBendContrib
, ForceFields::MMFF::AngleConstraintContrib
, ForceFields::MMFF::BondStretchContrib
, ForceFields::MMFF::DistanceConstraintContrib
, ForceFields::MMFF::EleContrib
, ForceFields::MMFF::OopBendContrib
, ForceFields::MMFF::PositionConstraintContrib
, ForceFields::MMFF::StretchBendContrib
, ForceFields::MMFF::TorsionAngleContrib
, ForceFields::MMFF::TorsionConstraintContrib
, ForceFields::MMFF::VdWContrib
, ForceFields::UFF::AngleBendContrib
, ForceFields::UFF::AngleConstraintContrib
, ForceFields::UFF::BondStretchContrib
, ForceFields::UFF::DistanceConstraintContrib
, ForceFields::UFF::InversionContrib
, ForceFields::UFF::PositionConstraintContrib
, ForceFields::UFF::TorsionAngleContrib
, ForceFields::UFF::TorsionConstraintContrib
, ForceFields::UFF::vdWContrib
, Queries::AndQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::EqualityQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::GreaterEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::GreaterQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::LessEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::LessQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::OrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::RangeQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, Queries::XOrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
, RDGeom::Point2D
, RDGeom::Point3D
, RDGeom::Point
, RDGeom::PointND
, RDKit::Atom
, RDKit::AtomKekulizeException
, RDKit::AtomMonomerInfo
, RDKit::AtomPDBResidueInfo
, RDKit::AtomRingQuery
, RDKit::AtomSanitizeException
, RDKit::AtomValenceException
, RDKit::Bond
, RDKit::CartesianProductStrategy
, RDKit::EnumerationStrategyBase
, RDKit::EvenSamplePairsStrategy
, RDKit::ExclusionList
, RDKit::FilterHierarchyMatcher
, RDKit::FilterMatcherBase
, RDKit::FilterMatchOps::And
, RDKit::FilterMatchOps::Not
, RDKit::FilterMatchOps::Or
, RDKit::HasPropQuery< TargetPtr >
, RDKit::HasPropWithValueQuery< TargetPtr, T >
, RDKit::HasPropWithValueQuery< TargetPtr, ExplicitBitVect >
, RDKit::HasPropWithValueQuery< TargetPtr, std::string >
, RDKit::KekulizeException
, RDKit::MolEnumerator::LinkNodeOp
, RDKit::MolEnumerator::MolEnumeratorOp
, RDKit::MolEnumerator::PositionVariationOp
, RDKit::MolEnumerator::RepeatUnitOp
, RDKit::MolSanitizeException
, RDKit::MolStandardize::FragmentValidation
, RDKit::MolStandardize::IsotopeValidation
, RDKit::MolStandardize::MolVSValidations
, RDKit::MolStandardize::NeutralValidation
, RDKit::MolStandardize::NoAtomValidation
, RDKit::QueryAtom
, RDKit::QueryBond
, RDKit::RandomSampleAllBBsStrategy
, RDKit::RandomSampleStrategy
, RDKit::RecursiveStructureQuery
, RDKit::SmartsMatcher
- CopyComplete
: RDKit::FMCS::Seed
- copyGene()
: RDKit::RGroupDecompositionChromosome
- core
: RDKit::RCore
- core_atoms_with_user_labels
: RDKit::RCore
- core_idx
: RDKit::RGroupMatch
- cores
: RDKit::RGroupDecompData
- countMatches()
: RDKit::SubstructLibrary
- counts
: RDKit::ScaffoldNetwork::ScaffoldNetwork
- countUserRGroups()
: RDKit::RCore
- CPCI
: RDKit::DGeomHelpers::EmbedParameters
- crd
: ForceFields::MMFF::MMFFProp
- createChromosome()
: RDKit::RGroupGa
- createDrawObjects()
: RDKit::MolDraw2D_detail::DrawMol
- createFromParent()
: RDKit::FMCS::Seed
- createPartialBond()
: RDKit::RWMol
- CreateShingling()
: RDKit::MHFPFingerprints::MHFPEncoder
- CRIPPEN
: RDKit::MolAlign::O3A
- CrippenParamCollection()
: RDKit::Descriptors::CrippenParamCollection
- crossProduct()
: RDGeom::Point3D
- CubicToFunctionImpl()
: RDKit::MolDraw2D_detail::DrawTextFT
, RDKit::MolDraw2D_detail::DrawTextFTCairo
, RDKit::MolDraw2D_detail::DrawTextFTJS
, RDKit::MolDraw2D_detail::DrawTextFTQt
, RDKit::MolDraw2D_detail::DrawTextFTSVG
- current
: RDKit::CXXAtomIterator< Graph, Vertex, Iterator >::CXXAtomIter
, RDKit::CXXBondIterator< Graph, Edge, Iterator >::CXXBondIter
- customAtomInvariants
: RDKit::FingerprintFuncArguments
- customBondInvariants
: RDKit::FingerprintFuncArguments
- CXXAtomIter()
: RDKit::CXXAtomIterator< Graph, Vertex, Iterator >::CXXAtomIter
- CXXAtomIterator()
: RDKit::CXXAtomIterator< Graph, Vertex, Iterator >
- CXXBondIter()
: RDKit::CXXBondIterator< Graph, Edge, Iterator >::CXXBondIter
- CXXBondIterator()
: RDKit::CXXBondIterator< Graph, Edge, Iterator >